adding certificate to the trusted list in macOS keychain - commandline vs GUI

I was wondering if there's any difference between adding trusted certificate from commandline :

security add-trusted-cert -d -r trustRoot ~/c1.cer

and opening the certificate in the keychain UI an mark it as "always trust". I've got an application that fail on server certificate validation when I mark the server's published certificates as valid from GUI but passes when I do the same from commandline.