Making associative array based on another associative array
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I made an associative array as follows. To give a few details, the keys refer to specific files because I will be using this array in the context of a larger script (where the directory containing the files will be a getopts argument).
declare -A BAMREADS
echo "BAMREADS array is initialized"
BAMREADS[../data/file1.bam]=33285268
BAMREADS[../data/file2.bam]=28777698
BAMREADS[../data/file3.bam]=22388955
echo ${BAMREADS[@]} # Output: 22388955 33285268 28777698
echo ${!BAMREADS[@]} # Output: ../data/file1.bam ../data/file2.bam ../data/file3.bam
So far, this array seems to behave as I expect. Now, I want to build another associative array based on this array. To be specific: my second array will have the same keys as my first one but I want to divide the values by a variable called $MIN.
I am not sure which of the following strategies is best and I can't seem to make either work.
**Strategy 1**: copy the array and modify the array?
MIN=33285268
declare -A BRAMFRACS
echo "BAMFRACS array is initialized"
BAMFRACS=("${BAMREADS[@]}")
echo ${BAMFRACS[@]} # Output: 22388955 33285268 28777698
echo ${!BAMFRACS[@]} # Output: 0 1 2
This is not what I want for the keys. Even if it works, I would then need to perform the operation I mentioned on all the values.
**Stragegy 2**: build the second array when looping through the first.
MIN=33285268
declare -A BRAMFRACS
echo "BAMFRACS array is initialized"
for i in $(ls $BAMFILES/*bam)
do
echo $i
echo ${BAMREADS[$i]}
BAMFRACS[$i] = ${BAMREADS[$i]}
done
echo ${BAMFRACS[@]}
echo ${!BAMFRACS[@]}
#When I run this, I get the following error which I am unsure how to solve:
../data/file1.bam
33285268
script.bash: line 108: BAMFRACS[../data/file1.bam]: No such file or directory
../data/file2.bam
28777698
script.bash: line 108: BAMFRACS[../data/file2.bam]: No such file or directory
../data/file3.bam
22388955
script.bash: line 108: BAMFRACS[../data/file3.bam]: No such file or directory
Thanks
Asked by mf94
(219 rep)
Aug 24, 2018, 11:54 AM
Last activity: Dec 5, 2023, 09:44 PM
Last activity: Dec 5, 2023, 09:44 PM