I'm running an array job (
400
Matlab R2018b tasks) in the HPC of my university. After having qsub
the .sh file in the terminal, the 400
tasks start by they are immediately killed.
In the .o file of each task no errors are reported but only the following warning
Warning: Name is nonexistent or not a directory:
/share/apps/.../NAG/mbl6a24dnl/mex.a64
________
In case it might be useful to know: I call the MOSEK solver in my Matlab .m file. In particular, at the beginning of my Matlab .m file I have
addpath /share/apps/mosek-9.2/9.2/toolbox/r2015aom
Also, this is my .sh file
#$ -S /bin/bash
#$ -l h_vmem=7G
#$ -l tmem=7G
#$ -l h_rt=480:0:0
#$ -cwd
#$ -j y
#Run 400 tasks
#$ -t 1-400
#$ -N count2
date
hostname
#Output the Task ID
echo "Task ID is $SGE_TASK_ID"
/share/apps/matlabR2018b -nodisplay -nodesktop -nojvm -nosplash -r "main; ID = $SGE_TASK_ID; f; exit"
Provided that I have contacted the administrator to ask about this (no reply yet), is there anything I can do can in the immediate to fix it and run my code?
Asked by Star
(125 rep)
May 9, 2020, 08:37 AM
Last activity: May 9, 2020, 02:11 PM
Last activity: May 9, 2020, 02:11 PM