how to print file name and total number of fasta sequences?
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I have a fasta file namely test.fasta, pas.fasta, cel.fasta as shown below
test.fasta
>tile
ATGTC
>259
TGAT
pas.fasta
>ta
ATGCT
cel.fasta
>787
TGTAG
>yog
TGTAT
>In
NNTAG
I need to print the file name and the total number of fasta sequences as shown below,
test,2
pas,1
cel,3
I have used the following commands but failed to serve my purpose
grep ">" test.fasta | wc -l && ls test.fasta
Please help me to do the same.
Thanks in advance.
Asked by Kumar
(129 rep)
Sep 5, 2021, 01:44 PM
Last activity: Mar 16, 2024, 09:12 AM
Last activity: Mar 16, 2024, 09:12 AM