I have a .fam file in plink format, looks like this
1 I001.HO 0 0 1 1
2 I002.HO 0 0 1 1
3 IREJ-T006.HO 0 0 1 1
4 IREJ-T009.HO 0 0 1 1
5 IREJ-T022.HO 0 0 1 1
6 IREJ-T023.HO 0 0 1 1
7 IREJ-T026.HO 0 0 1 1
8 IREJ-T027.HO 0 0 1 1
9 IREJ-T037.HO 0 0 1 1
10 IREJ-T040.HO 0 0 1 1
11 IREJ-T053.HO 0 0 1 1
12 IREJ-T064.HO 0 0 1 1
13 IREJ-T078.HO 0 0 1 1
14 IREJ-T090.HO 0 0 1 1
15 IREJ-T101.HO 0 0 1 1
16 IREJ-T103.HO 0 0 1 1
17 IREJ-T111.HO 0 0 1 1
18 IREJ-T184.HO 0 0 1 1
19 IREJ-T204.HO 0 0 1 1
20 MAL-005.HO 0 0 1 1
21 MAL-009.HO 0 0 1 1
but with thousands of lines.
But I only want a subset of these rows in my final data file.
I have a .txt file of each individual I want to keep.
So looks like
IREJ-T184.HO
IREJ-T204.HO
MAL-005.HO
MAL-009.HO
How can I use this .txt file to make a new file with only the rows that include those individuals listed in the .txt file? I want to keep all data in the row, not just the ID name.
Thanks!
Asked by Savannah Hay
(23 rep)
Oct 29, 2024, 10:17 PM
Last activity: Oct 29, 2024, 11:48 PM
Last activity: Oct 29, 2024, 11:48 PM