I am new to Linux.
I have a FASTA file that looks something like this:
~~~
>scaffold1
AAGACATAATATTTTGGAGGAATTAAAAAATTTAAGATGTATTTTATTATACATGTATTTTATTTATAACATAAATAAACATCCCAAGGAAAAGCAGTAGCT
>scaffold2
AAGGATAAGTGTAGCTGAGGAATTAAAAAATTTAACAAATAAAATTAATGCAATTTATTTTTTCAAATAAAAATACACGGAGAAAAATAATTTGTAAATTTT
~~~
etc. This goes on to about 5000+ scaffolds.
I want to make a histogram with the scaffold lengths.
I read about Biopython etc. but I don't know anything about installing these programs. Is there a way to get a histogram with just the Linux commands (terminal) or with R?
Thank you
Asked by Max Mustermann
(21 rep)
Jul 18, 2019, 11:59 AM
Last activity: Apr 4, 2024, 11:16 AM
Last activity: Apr 4, 2024, 11:16 AM