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Histogram with FASTA file

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1 answer
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I am new to Linux. I have a FASTA file that looks something like this: ~~~ >scaffold1 AAGACATAATATTTTGGAGGAATTAAAAAATTTAAGATGTATTTTATTATACATGTATTTTATTTATAACATAAATAAACATCCCAAGGAAAAGCAGTAGCT >scaffold2 AAGGATAAGTGTAGCTGAGGAATTAAAAAATTTAACAAATAAAATTAATGCAATTTATTTTTTCAAATAAAAATACACGGAGAAAAATAATTTGTAAATTTT ~~~ etc. This goes on to about 5000+ scaffolds. I want to make a histogram with the scaffold lengths. I read about Biopython etc. but I don't know anything about installing these programs. Is there a way to get a histogram with just the Linux commands (terminal) or with R? Thank you
Asked by Max Mustermann (21 rep)
Jul 18, 2019, 11:59 AM
Last activity: Apr 4, 2024, 11:16 AM