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spyder error == EPERM || EUSERS || EINVAL || ENOSYS : No space left on device
in RHEL-8.10 with `spyder` located in `/opt/anaconda3/bin/` where anaconda is from `Anaconda3-2021.05-Linux-x86_64.sh` when trying to run `/opt/anaconda3/bin/spyder` it core dumps immediately with this as the most relevant message error == EPERM || error == EUSERS || error == EINVAL || error == ENOS...
in RHEL-8.10 with
spyder
located in /opt/anaconda3/bin/
where anaconda is from Anaconda3-2021.05-Linux-x86_64.sh
when trying to run /opt/anaconda3/bin/spyder
it core dumps immediately with this as the most relevant message
error == EPERM || error == EUSERS || error == EINVAL || error == ENOSYS. : No space left on device
can anyone elaborate on what these **errors** mean? As for *no space left on device* the system does not have a swap partition, has 512GB of RAM, and has multiple partitions for /home
and /var
and /var/tmp
and tmp.mount
is enabled but a df -h
shows none of them being over or close to 50% full.
I suspect the cause is some security setting I have applied, as I do have spyder
working on identical rhel-8.10 server however with less security settings. But I have yet to identify which security setting I might have applied to cause this.
This github page has details of the entire coredump text that I am experiencing : https://github.com/spyder-ide/spyder/issues/6901
ron
(8647 rep)
Oct 2, 2024, 01:52 PM
• Last activity: Oct 2, 2024, 08:31 PM
2
votes
1
answers
222
views
How to start spyder from desktop on LMDE5?
I would like to start spyder from a `.desktop` shortcut. I am unfortunately unable to start it directly from AnacondaNav, as it stops with a `Exit code: 134` message. As an alternative, I installed spyder using: conda update -n base -c defaults conda conda update anaconda conda install spyder=5.4.2...
I would like to start spyder from a
I have tried copying/altering various other
Adding
.desktop
shortcut.
I am unfortunately unable to start it directly from AnacondaNav, as it stops with a Exit code: 134
message.
As an alternative, I installed spyder using:
conda update -n base -c defaults conda
conda update anaconda
conda install spyder=5.4.2
This lets me start spyder with:
conda activate spyder-env
spyder
How do I create a .desktop
file with these commands? I have tried copying/altering various other
.desktop
and .sh
files (with/out #!/bin/bash), but none have worked.
System setup:
- OS: LMDE 5 / elsie
- 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1
- Cinnamon 5.6.8
- Python 3.11.2
- conda 23.3.1
- Spyder IDE 5.4.2
Edit:
Tried some suggestions from the comments: (sh -c) conda activate spyder-env; spyder
gives either "There was an error launching the application" or no output at all. Adding
conda act...
to .profile
activates the python env but running spyder
from the .desktop
after that does nothing.
christerk
(21 rep)
Apr 3, 2023, 09:50 PM
• Last activity: Apr 4, 2023, 05:15 PM
0
votes
1
answers
53
views
Is Spyder 4.1.2 newer than 4.1.3?
I stated Spyder in Ubutun 20.04. It said that "Spyder 4.1.3 is available! ". I have installed the version 4.1.2. On the command line I got a message: (base) jaakko@jaakko-Lenovo-IdeaPad-L340-17IWL:~/Desktop$ sudo apt update Hit:1 http://fi.archive.ubuntu.com/ubuntu focal InRelease Hit:2 http://fi.ar...
I stated Spyder in Ubutun 20.04. It said that "Spyder 4.1.3 is available! ". I have installed the version 4.1.2. On the command line I got a message:
(base) jaakko@jaakko-Lenovo-IdeaPad-L340-17IWL:~/Desktop$ sudo apt update
Hit:1 http://fi.archive.ubuntu.com/ubuntu focal InRelease
Hit:2 http://fi.archive.ubuntu.com/ubuntu focal-updates InRelease
Hit:3 http://download.virtualbox.org/virtualbox/debian focal InRelease
Hit:4 http://fi.archive.ubuntu.com/ubuntu focal-backports InRelease
Hit:5 http://archive.canonical.com focal InRelease
Get:6 https://gitlab.com/paulcarroty/vscodium-deb-rpm-repo/raw/repos/debs vscodium InRelease [3 828 B]
Hit:7 http://security.ubuntu.com/ubuntu focal-security InRelease
Fetched 3 828 B in 1s (3 978 B/s)
Reading package lists... Done
Building dependency tree
Reading state information... Done
All packages are up to date.
(base) jaakko@jaakko-Lenovo-IdeaPad-L340-17IWL:~/Desktop$ sudo apt install spyder
Reading package lists... Done
Building dependency tree
Reading state information... Done
spyder is already the newest version (3.3.6+dfsg1-4build1).
The following packages were automatically installed and are no longer required:
libgnutls-openssl27 libvpx5
Use 'sudo apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
So what is going on here as 4.1.2 is newer version than 4.1.3? Or is this a bug?
guest
(3 rep)
Jun 23, 2020, 06:38 AM
• Last activity: Jun 23, 2020, 06:56 AM
0
votes
2
answers
855
views
I get an error trying to start Spyder after doing a "conda update --all"
This is the error I get when starting Spyder from a terminal window: $ spyder QApplication: invalid style override passed, ignoring it. Traceback (most recent call last): File "/home/daniel/anaconda3/bin/spyder", line 11, in sys.exit(main()) File "/home/daniel/anaconda3/lib/python3.7/site-packages/s...
This is the error I get when starting Spyder from a terminal window:
$ spyder
QApplication: invalid style override passed, ignoring it.
Traceback (most recent call last):
File "/home/daniel/anaconda3/bin/spyder", line 11, in
sys.exit(main())
File "/home/daniel/anaconda3/lib/python3.7/site-packages/spyder/app/
start.py", line 205, in main
mainwindow.main()
File "/home/daniel/anaconda3/lib/python3.7/site-packages/spyder/app/
mainwindow.py", line 3734, in main
mainwindow = run_spyder(app, options, args)
File "/home/daniel/anaconda3/lib/python3.7/site-packages/spyder/app/
mainwindow.py", line 3590, in run_spyder
main.setup()
File "/home/daniel/anaconda3/lib/python3.7/site-packages/spyder/app/
mainwindow.py", line 977, in setup
'spyder.plugins.{}'.format(plugin_name))
File "/home/daniel/anaconda3/lib/python3.7/importlib/__init__.py", line
127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "", line 1006, in _gcd_import
File "", line 983, in _find_and_load
File "", line 967, in
_find_and_load_unlocked
File "", line 677, in _load_unlocked
File "", line 728, in exec_module
File "", line 219, in
_call_with_frames_removed
File "/home/daniel/anaconda3/lib/python3.7/site-packages/spyder/
plugins/pylint/__init__.py", line 14, in
from .plugin import Pylint as PLUGIN_CLASS
File "/home/daniel/anaconda3/lib/python3.7/site-packages/spyder/
plugins/pylint/plugin.py", line 29, in
from spyder.plugins.pylint.confpage import PylintConfigPage
File "/home/daniel/anaconda3/lib/python3.7/site-packages/spyder/
plugins/pylint/confpage.py", line 16, in
from spyder.plugins.pylint.widgets.pylintgui import PylintWidget
File "/home/daniel/anaconda3/lib/python3.7/site-packages/spyder/
plugins/pylint/widgets/pylintgui.py", line 37, in
from spyder.plugins.pylint.utils import get_pylintrc_path
File "/home/daniel/anaconda3/lib/python3.7/site-packages/spyder/
plugins/pylint/utils.py", line 16, in
import pylint.config
File "/home/daniel/anaconda3/lib/python3.7/site-packages/pylint/
config.py", line 54, in
import toml
ModuleNotFoundError: No module named 'toml'
[1:1:0100/000000.345716:ERROR:broker_posix.cc(41)] Invalid node
channel message
[1:1:0100/000000.345673:ERROR:broker_posix.cc(41)] Invalid node
channel message
gornvix
(483 rep)
May 2, 2020, 08:44 PM
• Last activity: May 4, 2020, 12:08 PM
1
votes
1
answers
1701
views
Installing and running spyder3 in Debian Stretch
The stable version (3.1.3) in the Debian Stretch repository is kind of old (https://packages.debian.org/search?keywords=spyder3). So, I installed the 3.2.6 version via `pip3 install spyder --user`. How can I run it? Tried: `spyder`, `spyder3`, `python3-spyder` `python3 spyder`. It was installed corr...
The stable version (3.1.3) in the Debian Stretch repository is kind of old (https://packages.debian.org/search?keywords=spyder3) .
So, I installed the 3.2.6 version via
pip3 install spyder --user
.
How can I run it? Tried: spyder
, spyder3
, python3-spyder
python3 spyder
. It was installed correctly and can be imported into an interactive shell.
Pierre B
(2293 rep)
Jan 17, 2018, 08:06 PM
• Last activity: Mar 23, 2020, 02:02 PM
1
votes
1
answers
797
views
Can not run Spyder from conda env: MIT-MAGIC-COOKIE-1 error
When in conda environment I run spyder in my local machine (opensuse leap 15), I get the following error: > Invalid MIT-MAGIC-COOKIE-1 keyQXcbConnection: Could not connect to > display :0 Aborted (core dumped) Reinstalling the env and/or spyder does not help, neither this thread https://unix.stackex...
When in conda environment I run spyder in my local machine (opensuse leap 15), I get the following error:
> Invalid MIT-MAGIC-COOKIE-1 keyQXcbConnection: Could not connect to
> display :0 Aborted (core dumped)
Reinstalling the env and/or spyder does not help, neither this thread https://unix.stackexchange.com/questions/199891/invalid-mit-magic-cookie-1-key-when-trying-to-run-program-remotely
It used to work untill today. Any suggestions are appreciated
Grant
(11 rep)
Nov 4, 2019, 10:13 AM
• Last activity: Nov 21, 2019, 08:04 AM
0
votes
1
answers
6505
views
Missing Dependencies Spyder3 Python 3.5 - pylint 0.25 / rope 0.9.4
I have some problems with missing dependencies when starting Spyder 3 with Python 3.5. I use Debian Strech and switched to Python 3.5 as standard setting It says when starting Spyder3 rope 0.9.4 and pylint 0.2.5 is NOK. Here is the list from Spyder3: jedi >=0.9.0 : 0.10.0 (OK) matplotlib >=1.0 : 2.0...
I have some problems with missing dependencies when starting Spyder 3 with Python 3.5. I use Debian Strech and switched to Python 3.5 as standard setting It says when starting Spyder3 rope 0.9.4 and pylint 0.2.5 is NOK.
Here is the list from Spyder3:
jedi >=0.9.0 : 0.10.0 (OK)
matplotlib >=1.0 : 2.0.0 (OK)
nbconvert >=4.0 : 4.2.0 (OK)
numpy >=1.7 : 1.12.1 (OK)
pandas >=0.13.1 : 0.19.2 (OK)
pep8 >=0.6 : 1.7.0 (OK)
psutil >=0.3 : 5.0.1 (OK)
pyflakes >=0.6.0 : 1.3.0 (OK)
pygments >=2.0 : 2.2.0 (OK)
pylint >=0.25 : None (OK)
qtconsole >=4.2.0: 4.2.1 (OK)
rope >=0.9.4 : None (NOK)
sphinx >=0.6.6 : 1.4.9 (OK)
sympy >=0.7.3 : None (NOK)
I tried to install pylint3 and got:
apt-get install pylint3
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages were automatically installed and are no longer required:
[deleted huge list packages for autoremoval]
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
python3-astroid python3-isort python3-lazy-object-proxy python3-wrapt
Suggested packages:
pylint-doc python3-mccabe
The following NEW packages will be installed:
pylint3 python3-astroid python3-isort python3-lazy-object-proxy
python3-wrapt
0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded.
5 not fully installed or removed.
Need to get 384 kB of archives.
After this operation, 1,861 kB of additional disk space will be used.
Do you want to continue? [Y/n] y
Get:1 amd64 python3-lazy-object-proxy amd64 1.2.2-1 [20.7 kB]
Get:2 amd64 python3-wrapt amd64 1.9.0-2 [31.5 kB]
Get:3 http://ftp.ch.debian.org/debian stretch/main amd64 python3-astroid all 1.4.9-1 [89.7 kB]
Get:4 http://ftp.ch.debian.org/debian stretch/main amd64 python3-isort all 4.2.5+ds1-2 [38.0 kB]
Get:5 amd64 pylint3 all 1.6.5-1 [204 kB]
Fetched 384 kB in 0s (430 kB/s)
Selecting previously unselected package python3-lazy-object-proxy.
(Reading database ... 298576 files and directories currently installed.)
Preparing to unpack .../python3-lazy-object-proxy_1.2.2-1_amd64.deb ...
Unpacking python3-lazy-object-proxy (1.2.2-1) ...
Selecting previously unselected package python3-wrapt.
Preparing to unpack .../python3-wrapt_1.9.0-2_amd64.deb ...
Unpacking python3-wrapt (1.9.0-2) ...
Selecting previously unselected package python3-astroid.
Preparing to unpack .../python3-astroid_1.4.9-1_all.deb ...
Unpacking python3-astroid (1.4.9-1) ...
Selecting previously unselected package python3-isort.
Preparing to unpack .../python3-isort_4.2.5+ds1-2_all.deb ...
Unpacking python3-isort (4.2.5+ds1-2) ...
Selecting previously unselected package pylint3.
Preparing to unpack .../pylint3_1.6.5-1_all.deb ...
Unpacking pylint3 (1.6.5-1) ...
Setting up pylint (1.6.5-1) ...
Traceback (most recent call last):
File "/usr/bin/pycompile", line 35, in
from debpython.version import SUPPORTED, debsorted, vrepr, \
File "/usr/share/python/debpython/version.py", line 24, in
from ConfigParser import SafeConfigParser
ImportError: No module named 'ConfigParser'
dpkg: error processing package pylint (--configure):
subprocess installed post-installation script returned error exit status 1
Setting up python3-lazy-object-proxy (1.2.2-1) ...
Setting up python3-isort (4.2.5+ds1-2) ...
Setting up python3-wrapt (1.9.0-2) ...
dpkg: dependency problems prevent configuration of python3-spyder:
python3-spyder depends on pylint; however:
Package pylint is not configured yet.
dpkg: error processing package python3-spyder (--configure):
dependency problems - leaving unconfigured
Processing triggers for man-db (2.7.6.1-2) ...
dpkg: dependency problems prevent configuration of python-spyder:
python-spyder depends on pylint; however:
Package pylint is not configured yet.
dpkg: error processing package python-spyder (--configure):
dependency problems - leaving unconfigured
Setting up python3-astroid (1.4.9-1) ...
Setting up pylint3 (1.6.5-1) ...
dpkg: dependency problems prevent configuration of spyder:
spyder depends on python-spyder (= 3.1.3+dfsg1-3); however:
Package python-spyder is not configured yet.
dpkg: error processing package spyder (--configure):
dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of spyder3:
spyder3 depends on python3-spyder (= 3.1.3+dfsg1-3); however:
Package python3-spyder is not configured yet.
dpkg: error processing package spyder3 (--configure):
dependency problems - leaving unconfigured
Errors were encountered while processing:
pylint
python3-spyder
python-spyder
spyder
spyder3
E: Sub-process /usr/bin/dpkg returned an error code (1)
What is the problem here?
leo lerey
(1 rep)
Jul 23, 2017, 05:31 AM
• Last activity: Nov 4, 2017, 02:35 PM
Showing page 1 of 7 total questions